1 Response_reg#1
13-124 aa · 112 aa · 50.2% of protein
Raw token
Response_reg:13:5.47e-28:124:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW221_RS06700
Response regulator NarL family
Bifidobacterium bifidum · GCF_003470585
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470585#DW221_RS06700Stable P2CS identifier used across views.
GenomeGCF_003470585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 223 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
162-218 aa · 57 aa · 25.6% of protein
Raw token
HTH_LUXR:162:0.0000000000000018:218:58:58- Raw architecture: Response_reg:13:5.47e-28:124:112:111#HTH_LUXR:162:0.0000000000000018:218:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470585::NZ_QRJI01000005.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53930-56037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW221_06695RefSeq proteinWP_117631671.1
Context group ID
GCF_003470585::NZ_QRJI01000005.1::G00009Context members
DW221_RS06695DW221_RS06700
Partner locus tags
DW221_RS06695DW221_RS06700
Partner old locus tags
DW221_06690DW221_06695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117631671.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW221_RS06700Primary locus identifier stored in the genes table.
Old locus tagDW221_06695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRJI01000005.1Sequence record reported by the local genomic context database.
Genomic interval55 366-56 037 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 930-56 037 ntGCF_003470585::NZ_QRJI01000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470585::NZ_QRJI01000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRJI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span53 930-56 037 nt2 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 930 nt56 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW221_RS06695GCF_003470585#DW221_RS06695
HKClassic
53 930-55 369 nt · Forward (+)
DW221_RS06700GCF_003470585#DW221_RS06700
RRNarLCurrent focus
55 366-56 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437325#DXC56_RS05510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600120
Simplified PFAM architecture for RROC_1600120
PFAM domain coverage: 165 / 223 aa (74.0%)
1 aa223 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[11-124] | Sigma70_r4_2[156-206]
- Domain count: 2
- Matched identifier: RROC_1600120
- Positioned domains: Response_reg 11-124 ; Response_reg 11-124 ; Sigma70_r4_2 156-206 ; Sigma70_r4_2 156-206
Cluster members and taxonomy
Representative gene: GCF_003437325#DXC56_RS05510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_003470585
AssemblyASM347058v1 · Scaffoldhaploid
Genome composition2 201 171 bp · 63,0% GCBifidobacterium bifidum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key