1 Response_reg#1
4-115 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:4:1.8e-27:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW248_RS17075
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003470485
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470485#DW248_RS17075Stable P2CS identifier used across views.
GenomeGCF_003470485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 233 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.2e-28:229:77:77- Raw architecture: Response_reg:4:1.8e-27:115:113:111#Trans_reg_C:153:1.2e-28:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470485::NZ_QRIP01000056.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4289-5925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW248_17075RefSeq proteinWP_044963359.1
Context group ID
GCF_003470485::NZ_QRIP01000056.1::G00039Context members
DW248_RS17070DW248_RS17075
Partner locus tags
DW248_RS17070DW248_RS17075
Partner old locus tags
DW248_17070DW248_17075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044963359.1Primary protein accession used for annex mappings.
UniProt accessionA0A414UR99Primary UniProt accession resolved in the annex database.
UniProt IDA0A414UR99_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW248_RS17075Primary locus identifier stored in the genes table.
Old locus tagDW248_17075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIP01000056.1Sequence record reported by the local genomic context database.
Genomic interval5 224-5 925 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 289-5 925 ntGCF_003470485::NZ_QRIP01000056.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470485::NZ_QRIP01000056.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIP01000056.1All displayed genes belong to this local TCS context.
Neighborhood span4 289-5 925 nt1 637 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 289 nt5 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW248_RS17070GCF_003470485#DW248_RS17070
HKClassic
4 289-5 218 nt · Reverse (-)
DW248_RS17075GCF_003470485#DW248_RS17075
RROmpRCurrent focus
5 224-5 925 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS07335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1082786
Simplified PFAM architecture for RROC_1082786
PFAM domain coverage: 188 / 233 aa (80.7%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1082786
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS07335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003470485
AssemblyASM347048v1 · Scaffoldhaploid
Genome composition3 859 554 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key