1 HisKA#1
411-478 aa · 68 aa · 10.6% of protein
Raw token
HisKA:411:0.00000000000314:478:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW681_RS06140
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003470175
ClassHKTypeClassicLength639 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470175#DW681_RS06140Stable P2CS identifier used across views.
GenomeGCF_003470175Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length639 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 639 aa (28.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa639 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
523-634 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:523:5.41e-27:634:112:109- Raw architecture: HisKA:411:0.00000000000314:478:68:64#HATPase_c:523:5.41e-27:634:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470175::NZ_QSLK01000005.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114621-117231Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW681_06135RefSeq proteinWP_118143473.1
Context group ID
GCF_003470175::NZ_QSLK01000005.1::G00026Context members
DW681_RS06140DW681_RS06145
Partner locus tags
DW681_RS06140DW681_RS06145
Partner old locus tags
DW681_06135DW681_06140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118143473.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW681_RS06140Primary locus identifier stored in the genes table.
Old locus tagDW681_06135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLK01000005.1Sequence record reported by the local genomic context database.
Genomic interval114 621-116 540 nt1 920 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 621-117 231 ntGCF_003470175::NZ_QSLK01000005.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470175::NZ_QSLK01000005.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLK01000005.1All displayed genes belong to this local TCS context.
Neighborhood span114 621-117 231 nt2 611 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 621 nt117 231 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW681_RS06140GCF_003470175#DW681_RS06140
HKClassicCurrent focus
114 621-116 540 nt · Forward (+)
DW681_RS06145GCF_003470175#DW681_RS06145
RROmpR
116 533-117 231 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470175#DW681_RS06140The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0924263
Simplified PFAM architecture for HKOC_0924263
PFAM domain coverage: 285 / 639 aa (44.6%)
1 aa639 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[153-259] | HisKA[411-478] | HATPase_c[524-633]
- Domain count: 3
- Matched identifier: HKOC_0924263
- Positioned domains: DUF4118 153-259 ; HisKA 411-478 ; HATPase_c 524-633
Cluster members and taxonomy
Representative gene: GCF_003470175#DW681_RS06140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003470175
AssemblyASM347017v1 · Scaffoldhaploid
Genome composition3 698 520 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key