1 Response_reg#1
2-117 aa · 116 aa · 93.5% of protein
Raw token
Response_reg:2:2.67e-30:117:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW681_RS01340
Response regulator, CheY family
Thomasclavelia ramosa · GCF_003470175
ClassRRTypeCheYLength124 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470175#DW681_RS01340Stable P2CS identifier used across views.
GenomeGCF_003470175Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length124 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage116 / 124 aa (93.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa124 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:2:2.67e-30:117:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470175::NZ_QSLK01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span260619-262545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW681_01340RefSeq proteinWP_009300559.1
Context group ID
GCF_003470175::NZ_QSLK01000001.1::G00002Context members
DW681_RS01340DW681_RS01345
Partner locus tags
DW681_RS01340DW681_RS01345
Partner old locus tags
DW681_01340DW681_01345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009300559.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW681_RS01340Primary locus identifier stored in the genes table.
Old locus tagDW681_01340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLK01000001.1Sequence record reported by the local genomic context database.
Genomic interval260 619-260 993 nt375 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span260 619-262 545 ntGCF_003470175::NZ_QSLK01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470175::NZ_QSLK01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span260 619-262 545 nt1 927 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
260 619 nt262 545 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW681_RS01340GCF_003470175#DW681_RS01340
RRCheYCurrent focus
260 619-260 993 nt · Reverse (-)
DW681_RS01345GCF_003470175#DW681_RS01345
HKClassic
261 019-262 545 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470175#DW681_RS01340The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2383676
Simplified PFAM architecture for RROC_2383676
PFAM domain coverage: 116 / 124 aa (93.5%)
1 aa124 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-117]
- Domain count: 1
- Matched identifier: RROC_2383676
- Positioned domains: Response_reg 2-117 ; Response_reg 2-117
Cluster members and taxonomy
Representative gene: GCF_003470175#DW681_RS01340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003470175
AssemblyASM347017v1 · Scaffoldhaploid
Genome composition3 698 520 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key