1 Response_reg#1
3-118 aa · 116 aa · 58.0% of protein
Raw token
Response_reg:3:7.74e-19:118:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW722_RS15980
Response regulator NarL family
Mediterraneibacter gnavus · GCF_003469585
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003469585#DW722_RS15980Stable P2CS identifier used across views.
GenomeGCF_003469585Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 200 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
134-190 aa · 57 aa · 28.5% of protein
Raw token
HTH_LUXR:134:9.59e-18:190:57:58- Raw architecture: Response_reg:3:7.74e-19:118:118:111#HTH_LUXR:134:9.59e-18:190:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003469585::NZ_QSKP01000031.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4439-5041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW722_15975RefSeq proteinWP_055039879.1
Context group ID
GCF_003469585::NZ_QSKP01000031.1::G00035Context members
DW722_RS15980
Partner locus tags
DW722_RS15980
Partner old locus tags
DW722_15975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055039879.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WQG1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WQG1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW722_RS15980Primary locus identifier stored in the genes table.
Old locus tagDW722_15975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKP01000031.1Sequence record reported by the local genomic context database.
Genomic interval4 439-5 041 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 439-5 041 ntGCF_003469585::NZ_QSKP01000031.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469585::NZ_QSKP01000031.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKP01000031.1All displayed genes belong to this local TCS context.
Neighborhood span4 439-5 041 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 439 nt5 041 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW722_RS15980GCF_003469585#DW722_RS15980
RRNarLCurrent focus
4 439-5 041 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS13845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134612
Simplified PFAM architecture for RROC_2134612
PFAM domain coverage: 170 / 200 aa (85.0%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-117] | GerE[135-189]
- Domain count: 2
- Matched identifier: RROC_2134612
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; GerE 135-189 ; GerE 135-189
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS13845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003469585
AssemblyASM346958v1 · Scaffoldhaploid
Genome composition3 456 136 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 87 · HK 41 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key