1 Response_reg#1
9-133 aa · 125 aa · 50.2% of protein
Raw token
Response_reg:9:2.32e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW825_RS03900
Response regulator NarL family
Bifidobacterium adolescentis · GCF_003469145
ClassRRTypeNarLLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469145#DW825_RS03900Stable P2CS identifier used across views.
GenomeGCF_003469145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 249 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
186-243 aa · 58 aa · 23.3% of protein
Raw token
HTH_LUXR:186:2.77e-23:243:58:58- Raw architecture: Response_reg:9:2.32e-28:133:125:111#HTH_LUXR:186:2.77e-23:243:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469145::NZ_QSIK01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span912587-916022Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW825_03900RefSeq proteinWP_039774950.1
Context group ID
GCF_003469145::NZ_QSIK01000001.1::G00006Context members
DW825_RS03895DW825_RS03900
Partner locus tags
DW825_RS03895DW825_RS03900
Partner old locus tags
DW825_03895DW825_03900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039774950.1Primary protein accession used for annex mappings.
UniProt accessionA0A0B5BFT3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0B5BFT3_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW825_RS03900Primary locus identifier stored in the genes table.
Old locus tagDW825_03900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSIK01000001.1Sequence record reported by the local genomic context database.
Genomic interval915 273-916 022 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span912 587-916 022 ntGCF_003469145::NZ_QSIK01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469145::NZ_QSIK01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSIK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span912 587-916 022 nt3 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
912 587 nt916 022 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW825_RS03895GCF_003469145#DW825_RS03895
HKClassic
912 587-915 196 nt · Forward (+)
DW825_RS03900GCF_003469145#DW825_RS03900
RRNarLCurrent focus
915 273-916 022 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000817995#BBMN23_RS03235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0732847
Simplified PFAM architecture for RROC_0732847
PFAM domain coverage: 180 / 249 aa (72.3%)
1 aa249 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[188-243]
- Domain count: 2
- Matched identifier: RROC_0732847
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 188-243 ; GerE 188-243
Cluster members and taxonomy
Representative gene: GCF_000817995#BBMN23_RS03235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003469145
AssemblyASM346914v1 · Scaffoldhaploid
Genome composition2 173 388 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key