1 Response_reg#1
6-117 aa · 112 aa · 31.4% of protein
Raw token
Response_reg:6:8.17e-22:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW812_RS16395
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_003468635
ClassRRTypeunclassifiedLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468635#DW812_RS16395Stable P2CS identifier used across views.
GenomeGCF_003468635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 357 aa (54.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
259-300 aa · 42 aa · 11.8% of protein
Raw token
HTH_AraC:259:0.000000614:300:42:423 HTH_AraC#3
311-349 aa · 39 aa · 10.9% of protein
Raw token
HTH_AraC:311:0.000000995:349:39:42- Raw architecture: Response_reg:6:8.17e-22:117:112:111#HTH_AraC:259:0.000000614:300:42:42#HTH_AraC:311:0.000000995:349:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468635::NZ_QSIR01000036.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24097-26920Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW812_16395RefSeq proteinWP_118044185.1
Context group ID
GCF_003468635::NZ_QSIR01000036.1::G00032Context members
DW812_RS16390DW812_RS16395
Partner locus tags
DW812_RS16390DW812_RS16395
Partner old locus tags
DW812_16390DW812_16395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118044185.1Primary protein accession used for annex mappings.
UniProt accessionA0A414CYR1Primary UniProt accession resolved in the annex database.
UniProt IDA0A414CYR1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW812_RS16395Primary locus identifier stored in the genes table.
Old locus tagDW812_16395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSIR01000036.1Sequence record reported by the local genomic context database.
Genomic interval25 847-26 920 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 097-26 920 ntGCF_003468635::NZ_QSIR01000036.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468635::NZ_QSIR01000036.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSIR01000036.1All displayed genes belong to this local TCS context.
Neighborhood span24 097-26 920 nt2 824 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 097 nt26 920 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW812_RS16390GCF_003468635#DW812_RS16390
HKClassic
24 097-25 869 nt · Forward (+)
DW812_RS16395GCF_003468635#DW812_RS16395
RRunclassifiedCurrent focus
25 847-26 920 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468635#DW812_RS16395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0465005
Simplified PFAM architecture for RROC_0465005
PFAM domain coverage: 190 / 357 aa (53.2%)
1 aa357 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[272-349]
- Domain count: 2
- Matched identifier: RROC_0465005
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 272-349 ; HTH_18 272-349
Cluster members and taxonomy
Representative gene: GCF_003468635#DW812_RS16395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003468635
AssemblyASM346863v1 · Scaffoldhaploid
Genome composition3 851 554 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key