1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:1.85e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW812_RS10875
Response regulator NarL family
Mediterraneibacter gnavus · GCF_003468635
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468635#DW812_RS10875Stable P2CS identifier used across views.
GenomeGCF_003468635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 206 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-201 aa · 52 aa · 25.2% of protein
Raw token
HTH_LUXR:150:1.06e-21:201:52:58- Raw architecture: Response_reg:3:1.85e-26:103:101:111#HTH_LUXR:150:1.06e-21:201:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468635::NZ_QSIR01000015.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span77693-79022Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW812_10875RefSeq proteinWP_118043910.1
Context group ID
GCF_003468635::NZ_QSIR01000015.1::G00011Context members
DW812_RS19890DW812_RS10875
Partner locus tags
DW812_RS19890DW812_RS10875
Partner old locus tags
DW812_10875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118043910.1Primary protein accession used for annex mappings.
UniProt accessionA0A414D6N8Primary UniProt accession resolved in the annex database.
UniProt IDA0A414D6N8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW812_RS10875Primary locus identifier stored in the genes table.
Old locus tagDW812_10875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSIR01000015.1Sequence record reported by the local genomic context database.
Genomic interval78 402-79 022 nt621 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span77 693-79 022 ntGCF_003468635::NZ_QSIR01000015.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468635::NZ_QSIR01000015.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSIR01000015.1All displayed genes belong to this local TCS context.
Neighborhood span77 693-79 022 nt1 330 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 693 nt79 022 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW812_RS19890GCF_003468635#DW812_RS19890
HKClassic
77 693-78 397 nt · Forward (+)
DW812_RS10875GCF_003468635#DW812_RS10875
RRNarLCurrent focus
78 402-79 022 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468635#DW812_RS10875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2083282
Simplified PFAM architecture for RROC_2083282
PFAM domain coverage: 159 / 206 aa (77.2%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-109] | GerE[150-201]
- Domain count: 2
- Matched identifier: RROC_2083282
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109 ; GerE 150-201 ; GerE 150-201
Cluster members and taxonomy
Representative gene: GCF_003468635#DW812_RS10875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003468635
AssemblyASM346863v1 · Scaffoldhaploid
Genome composition3 851 554 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key