1 HisKA#1
496-560 aa · 65 aa · 8.9% of protein
Raw token
HisKA:496:0.00000000000000656:560:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW812_RS07420
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003468635
ClassHKTypeClassicLength727 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468635#DW812_RS07420Stable P2CS identifier used across views.
GenomeGCF_003468635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length727 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 727 aa (21.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa727 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
613-702 aa · 90 aa · 12.4% of protein
Raw token
HATPase_c:613:0.00000000000584:702:94:109- Raw architecture: HisKA:496:0.00000000000000656:560:65:64#HATPase_c:613:0.00000000000584:702:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468635::NZ_QSIR01000008.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113218-116071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW812_07420RefSeq proteinWP_118043773.1
Context group ID
GCF_003468635::NZ_QSIR01000008.1::G00052Context members
DW812_RS07420DW812_RS07425
Partner locus tags
DW812_RS07420DW812_RS07425
Partner old locus tags
DW812_07420DW812_07425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118043773.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4V153Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4V153_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW812_RS07420Primary locus identifier stored in the genes table.
Old locus tagDW812_07420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSIR01000008.1Sequence record reported by the local genomic context database.
Genomic interval113 218-115 401 nt2 184 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 218-116 071 ntGCF_003468635::NZ_QSIR01000008.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468635::NZ_QSIR01000008.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSIR01000008.1All displayed genes belong to this local TCS context.
Neighborhood span113 218-116 071 nt2 854 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 218 nt116 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW812_RS07420GCF_003468635#DW812_RS07420
HKClassicCurrent focus
113 218-115 401 nt · Reverse (-)
DW812_RS07425GCF_003468635#DW812_RS07425
RROmpR
115 373-116 071 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468635#DW812_RS07420The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0719417
Simplified PFAM architecture for HKOC_0719417
PFAM domain coverage: 161 / 727 aa (22.1%)
1 aa727 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[496-560] | HATPase_c[608-703]
- Domain count: 2
- Matched identifier: HKOC_0719417
- Positioned domains: HisKA 496-560 ; HATPase_c 608-703
Cluster members and taxonomy
Representative gene: GCF_003468635#DW812_RS07420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003468635
AssemblyASM346863v1 · Scaffoldhaploid
Genome composition3 851 554 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key