1 HisKA#1
133-197 aa · 65 aa · 18.3% of protein
Raw token
HisKA:133:0.00000000000778:197:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW812_RS06705
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003468635
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003468635#DW812_RS06705Stable P2CS identifier used across views.
GenomeGCF_003468635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 356 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-350 aa · 110 aa · 30.9% of protein
Raw token
HATPase_c:241:1.63e-25:350:111:109- Raw architecture: HisKA:133:0.00000000000778:197:65:64#HATPase_c:241:1.63e-25:350:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003468635::NZ_QSIR01000007.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93065-94841Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW812_06705RefSeq proteinWP_009245163.1
Context group ID
GCF_003468635::NZ_QSIR01000007.1::G00049Context members
DW812_RS06705DW812_RS06710
Partner locus tags
DW812_RS06705DW812_RS06710
Partner old locus tags
DW812_06705DW812_06710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245163.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NGL3Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NGL3_MEDG5Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW812_RS06705Primary locus identifier stored in the genes table.
Old locus tagDW812_06705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSIR01000007.1Sequence record reported by the local genomic context database.
Genomic interval93 065-94 135 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span93 065-94 841 ntGCF_003468635::NZ_QSIR01000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468635::NZ_QSIR01000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSIR01000007.1All displayed genes belong to this local TCS context.
Neighborhood span93 065-94 841 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 065 nt94 841 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW812_RS06705GCF_003468635#DW812_RS06705
HKClassicCurrent focus
93 065-94 135 nt · Forward (+)
DW812_RS06710GCF_003468635#DW812_RS06710
RROmpR
94 128-94 841 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS06905Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2770232
Simplified PFAM architecture for HKOC_2770232
PFAM domain coverage: 281 / 356 aa (78.9%)
1 aa356 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[10-117] | HisKA[132-196] | HATPase_c[242-349]
- Domain count: 3
- Matched identifier: HKOC_2770232
- Positioned domains: DUF4118 10-117 ; HisKA 132-196 ; HATPase_c 242-349
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS06905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003468635
AssemblyASM346863v1 · Scaffoldhaploid
Genome composition3 851 554 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key