1 Response_reg#1
9-123 aa · 115 aa · 53.0% of protein
Raw token
Response_reg:9:0.0000000000303:123:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW849_RS07810
Response regulator NarL family
Bifidobacterium adolescentis · GCF_003468385
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003468385#DW849_RS07810Stable P2CS identifier used across views.
GenomeGCF_003468385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 217 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
157-210 aa · 54 aa · 24.9% of protein
Raw token
HTH_LUXR:157:3.9e-19:210:54:58- Raw architecture: Response_reg:9:0.0000000000303:123:115:111#HTH_LUXR:157:3.9e-19:210:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003468385::NZ_QSHT01000004.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span63910-64563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW849_07810RefSeq proteinWP_259322463.1
Context group ID
GCF_003468385::NZ_QSHT01000004.1::G00014Context members
DW849_RS07810
Partner locus tags
DW849_RS07810
Partner old locus tags
DW849_07810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_259322463.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW849_RS07810Primary locus identifier stored in the genes table.
Old locus tagDW849_07810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHT01000004.1Sequence record reported by the local genomic context database.
Genomic interval63 910-64 563 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 910-64 563 ntGCF_003468385::NZ_QSHT01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468385::NZ_QSHT01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHT01000004.1All displayed genes belong to this local TCS context.
Neighborhood span63 910-64 563 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 910 nt64 563 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW849_RS07810GCF_003468385#DW849_RS07810
RRNarLCurrent focus
63 910-64 563 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468385#DW849_RS07810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1854383
Simplified PFAM architecture for RROC_1854383
PFAM domain coverage: 169 / 217 aa (77.9%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-122] | GerE[156-210]
- Domain count: 2
- Matched identifier: RROC_1854383
- Positioned domains: Response_reg 9-122 ; Response_reg 9-122 ; GerE 156-210 ; GerE 156-210
Cluster members and taxonomy
Representative gene: GCF_003468385#DW849_RS07810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003468385
AssemblyASM346838v1 · Scaffoldhaploid
Genome composition2 215 465 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key