1 Response_reg#1
3-120 aa · 118 aa · 35.1% of protein
Raw token
Response_reg:3:3.08e-29:120:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS08740
Response regulator, unclassified
Roseburia intestinalis · GCF_003467725
ClassRRTypeunclassifiedLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467725#DW856_RS08740Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 336 aa (56.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
238-277 aa · 40 aa · 11.9% of protein
Raw token
HTH_AraC:238:0.0000000259:277:40:423 HTH_AraC#3
296-327 aa · 32 aa · 9.5% of protein
Raw token
HTH_AraC:296:0.0000000428:327:32:42- Raw architecture: Response_reg:3:3.08e-29:120:118:111#HTH_AraC:238:0.0000000259:277:40:42#HTH_AraC:296:0.0000000428:327:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467725::NZ_QSHO01000006.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191207-194007Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_08725RefSeq proteinWP_055040392.1
Context group ID
GCF_003467725::NZ_QSHO01000006.1::G00054Context members
DW856_RS08735DW856_RS08740
Partner locus tags
DW856_RS08735DW856_RS08740
Partner old locus tags
DW856_08720DW856_08725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055040392.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WYQ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WYQ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS08740Primary locus identifier stored in the genes table.
Old locus tagDW856_08725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000006.1Sequence record reported by the local genomic context database.
Genomic interval192 997-194 007 nt1 011 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 207-194 007 ntGCF_003467725::NZ_QSHO01000006.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000006.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000006.1All displayed genes belong to this local TCS context.
Neighborhood span191 207-194 007 nt2 801 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 207 nt194 007 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW856_RS08735GCF_003467725#DW856_RS08735
HKClassic
191 207-192 982 nt · Forward (+)
DW856_RS08740GCF_003467725#DW856_RS08740
RRunclassifiedCurrent focus
192 997-194 007 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406675#ARA14_RS01660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0509053
Simplified PFAM architecture for RROC_0509053
PFAM domain coverage: 182 / 336 aa (54.2%)
1 aa336 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-105] | HTH_18[252-330]
- Domain count: 2
- Matched identifier: RROC_0509053
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; HTH_18 252-330 ; HTH_18 252-330
Cluster members and taxonomy
Representative gene: GCF_001406675#ARA14_RS01660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key