1 Response_reg#1
3-112 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:3:1.53e-17:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS08635
Response regulator LytTR family
Roseburia intestinalis · GCF_003467725
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467725#DW856_RS08635Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 234 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-225 aa · 88 aa · 37.6% of protein
Raw token
LytTR:138:1.46e-18:225:93:98- Raw architecture: Response_reg:3:1.53e-17:112:112:111#LytTR:138:1.46e-18:225:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467725::NZ_QSHO01000006.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span175476-176180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_08630RefSeq proteinWP_118597755.1
Context group ID
GCF_003467725::NZ_QSHO01000006.1::G00053Context members
DW856_RS08635
Partner locus tags
DW856_RS08635
Partner old locus tags
DW856_08630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118597755.1Primary protein accession used for annex mappings.
UniProt accessionA0A413Z7Q9Primary UniProt accession resolved in the annex database.
UniProt IDA0A413Z7Q9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS08635Primary locus identifier stored in the genes table.
Old locus tagDW856_08630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000006.1Sequence record reported by the local genomic context database.
Genomic interval175 476-176 180 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span175 476-176 180 ntGCF_003467725::NZ_QSHO01000006.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000006.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000006.1All displayed genes belong to this local TCS context.
Neighborhood span175 476-176 180 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 476 nt176 180 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW856_RS08635GCF_003467725#DW856_RS08635
RRLytTRCurrent focus
175 476-176 180 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467725#DW856_RS08635The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055573
Simplified PFAM architecture for RROC_1055573
PFAM domain coverage: 197 / 234 aa (84.2%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[138-224]
- Domain count: 2
- Matched identifier: RROC_1055573
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 138-224 ; LytTR 138-224
Cluster members and taxonomy
Representative gene: GCF_003467725#DW856_RS08635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key