1 Response_reg#1
6-114 aa · 109 aa · 45.8% of protein
Raw token
Response_reg:6:0.0000000000417:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS07580
Response regulator LytTR family
Roseburia intestinalis · GCF_003467725
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467725#DW856_RS07580Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 238 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-229 aa · 89 aa · 37.4% of protein
Raw token
LytTR:141:8.16e-17:229:94:98- Raw architecture: Response_reg:6:0.0000000000417:114:111:111#LytTR:141:8.16e-17:229:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467725::NZ_QSHO01000005.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span235494-236210Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_07575RefSeq proteinWP_006858389.1
Context group ID
GCF_003467725::NZ_QSHO01000005.1::G00049Context members
DW856_RS07580
Partner locus tags
DW856_RS07580
Partner old locus tags
DW856_07575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006858389.1Primary protein accession used for annex mappings.
UniProt accessionD4KVK2Primary UniProt accession resolved in the annex database.
UniProt IDD4KVK2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS07580Primary locus identifier stored in the genes table.
Old locus tagDW856_07575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000005.1Sequence record reported by the local genomic context database.
Genomic interval235 494-236 210 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span235 494-236 210 ntGCF_003467725::NZ_QSHO01000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000005.1All displayed genes belong to this local TCS context.
Neighborhood span235 494-236 210 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 494 nt236 210 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW856_RS07580GCF_003467725#DW856_RS07580
RRLytTRCurrent focus
235 494-236 210 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS14740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932539
Simplified PFAM architecture for RROC_0932539
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[11-115] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0932539
- Positioned domains: Response_reg 11-115 ; Response_reg 11-115 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS14740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key