1 HisKA#1
61-124 aa · 64 aa · 23.4% of protein
Raw token
HisKA:61:0.00000000000062:124:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS05585
Histidine kinase, Classic
Roseburia intestinalis · GCF_003467725
ClassHKTypeClassicLength274 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467725#DW856_RS05585Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length274 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 274 aa (61.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa274 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
169-272 aa · 104 aa · 38.0% of protein
Raw token
HATPase_c:169:0.00000000000000226:272:107:109- Raw architecture: HisKA:61:0.00000000000062:124:64:64#HATPase_c:169:0.00000000000000226:272:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467725::NZ_QSHO01000004.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89052-90528Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_05580RefSeq proteinWP_118597317.1
Context group ID
GCF_003467725::NZ_QSHO01000004.1::G00043Context members
DW856_RS05580DW856_RS05585
Partner locus tags
DW856_RS05580DW856_RS05585
Partner old locus tags
DW856_05575DW856_05580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118597317.1Primary protein accession used for annex mappings.
UniProt accessionA0A3R6FAQ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3R6FAQ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS05585Primary locus identifier stored in the genes table.
Old locus tagDW856_05580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000004.1Sequence record reported by the local genomic context database.
Genomic interval89 704-90 528 nt825 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 052-90 528 ntGCF_003467725::NZ_QSHO01000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000004.1All displayed genes belong to this local TCS context.
Neighborhood span89 052-90 528 nt1 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 052 nt90 528 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW856_RS05580GCF_003467725#DW856_RS05580
RROmpR
89 052-89 714 nt · Forward (+)
DW856_RS05585GCF_003467725#DW856_RS05585
HKClassicCurrent focus
89 704-90 528 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467725#DW856_RS05585The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2905132
Simplified PFAM architecture for HKOC_2905132
PFAM domain coverage: 167 / 274 aa (60.9%)
1 aa274 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[62-124] | HATPase_c[169-272]
- Domain count: 2
- Matched identifier: HKOC_2905132
- Positioned domains: HisKA 62-124 ; HATPase_c 169-272
Cluster members and taxonomy
Representative gene: GCF_003467725#DW856_RS05585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key