1 Response_reg#1
7-116 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:7:4.36e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS03935
Response regulator OmpR family
Roseburia intestinalis · GCF_003467725
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467725#DW856_RS03935Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:155:1.08e-33:229:77:77- Raw architecture: Response_reg:7:4.36e-35:116:111:111#Trans_reg_C:155:1.08e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467725::NZ_QSHO01000003.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65483-67620Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_03930RefSeq proteinWP_015560101.1
Context group ID
GCF_003467725::NZ_QSHO01000003.1::G00036Context members
DW856_RS03930DW856_RS03935
Partner locus tags
DW856_RS03930DW856_RS03935
Partner old locus tags
DW856_03925DW856_03930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015560101.1Primary protein accession used for annex mappings.
UniProt accessionA0A173VCR0Primary UniProt accession resolved in the annex database.
UniProt IDA0A173VCR0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS03935Primary locus identifier stored in the genes table.
Old locus tagDW856_03930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000003.1Sequence record reported by the local genomic context database.
Genomic interval66 916-67 620 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 483-67 620 ntGCF_003467725::NZ_QSHO01000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span65 483-67 620 nt2 138 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 483 nt67 620 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW856_RS03930GCF_003467725#DW856_RS03930
HKClassic
65 483-66 919 nt · Reverse (-)
DW856_RS03935GCF_003467725#DW856_RS03935
RROmpRCurrent focus
66 916-67 620 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209995#ROI_RS06650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047723
Simplified PFAM architecture for RROC_1047723
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[156-229]
- Domain count: 2
- Matched identifier: RROC_1047723
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 156-229 ; Trans_reg_C 156-229
Cluster members and taxonomy
Representative gene: GCF_000209995#ROI_RS06650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key