1 Response_reg#1
6-119 aa · 114 aa · 21.4% of protein
Raw token
Response_reg:6:9.02e-28:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS03140
Response regulator, unclassified
Roseburia intestinalis · GCF_003467725
ClassRRTypeunclassifiedLength533 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467725#DW856_RS03140Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length533 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 533 aa (34.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa533 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
437-479 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:437:0.0000000996:479:43:423 HTH_AraC#3
500-527 aa · 28 aa · 5.3% of protein
Raw token
HTH_AraC:500:0.0000000602:527:28:42- Raw architecture: Response_reg:6:9.02e-28:119:114:111#HTH_AraC:437:0.0000000996:479:43:42#HTH_AraC:500:0.0000000602:527:28:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467725::NZ_QSHO01000002.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span269740-273179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_03135RefSeq proteinWP_015520937.1
Context group ID
GCF_003467725::NZ_QSHO01000002.1::G00030Context members
DW856_RS03135DW856_RS03140
Partner locus tags
DW856_RS03135DW856_RS03140
Partner old locus tags
DW856_03130DW856_03135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015520937.1Primary protein accession used for annex mappings.
UniProt accessionD4KYA3Primary UniProt accession resolved in the annex database.
UniProt IDD4KYA3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS03140Primary locus identifier stored in the genes table.
Old locus tagDW856_03135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000002.1Sequence record reported by the local genomic context database.
Genomic interval271 578-273 179 nt1 602 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span269 740-273 179 ntGCF_003467725::NZ_QSHO01000002.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000002.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span269 740-273 179 nt3 440 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
269 740 nt273 179 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW856_RS03135GCF_003467725#DW856_RS03135
HKClassic
269 740-271 581 nt · Reverse (-)
DW856_RS03140GCF_003467725#DW856_RS03140
RRunclassifiedCurrent focus
271 578-273 179 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210655#RO1_RS08035Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0105882
Simplified PFAM architecture for RROC_0105882
PFAM domain coverage: 322 / 533 aa (60.4%)
1 aa533 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[160-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0105882
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GGDEF_2 160-291 ; GGDEF_2 160-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_000210655#RO1_RS08035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key