1 Response_reg#1
4-117 aa · 114 aa · 21.4% of protein
Raw token
Response_reg:4:5.82e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS02625
Response regulator, unclassified
Roseburia intestinalis · GCF_003467725
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467725#DW856_RS02625Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 532 aa (29.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.000000515:475:42:42- Raw architecture: Response_reg:4:5.82e-29:117:114:111#HTH_AraC:434:0.000000515:475:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467725::NZ_QSHO01000002.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151815-155263Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_02625RefSeq proteinWP_006858281.1
Context group ID
GCF_003467725::NZ_QSHO01000002.1::G00028Context members
DW856_RS02625DW856_RS02630
Partner locus tags
DW856_RS02625DW856_RS02630
Partner old locus tags
DW856_02625DW856_02630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006858281.1Primary protein accession used for annex mappings.
UniProt accessionD4L0E2Primary UniProt accession resolved in the annex database.
UniProt IDD4L0E2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS02625Primary locus identifier stored in the genes table.
Old locus tagDW856_02625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000002.1Sequence record reported by the local genomic context database.
Genomic interval151 815-153 413 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 815-155 263 ntGCF_003467725::NZ_QSHO01000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span151 815-155 263 nt3 449 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 815 nt155 263 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW856_RS02625GCF_003467725#DW856_RS02625
RRunclassifiedCurrent focus
151 815-153 413 nt · Reverse (-)
DW856_RS02630GCF_003467725#DW856_RS02630
HKClassic
153 464-155 263 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS14235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107825
Simplified PFAM architecture for RROC_0107825
PFAM domain coverage: 191 / 532 aa (35.9%)
1 aa532 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[449-525]
- Domain count: 2
- Matched identifier: RROC_0107825
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 449-525 ; HTH_18 449-525
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS14235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key