1 HAMP#1
202-269 aa · 68 aa · 13.7% of protein
Raw token
HAMP:202:0.0000000000000626:269:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS01235
Histidine kinase, Classic
Roseburia intestinalis · GCF_003467725
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467725#DW856_RS01235Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 496 aa (49.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-339 aa · 64 aa · 12.9% of protein
Raw token
HisKA:276:3.37e-20:339:64:643 HATPase_c#3
384-496 aa · 113 aa · 22.8% of protein
Raw token
HATPase_c:384:6.58e-28:496:113:109- Raw architecture: HAMP:202:0.0000000000000626:269:69:69#HisKA:276:3.37e-20:339:64:64#HATPase_c:384:6.58e-28:496:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467725::NZ_QSHO01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span252286-254440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_01235RefSeq proteinWP_118597006.1
Context group ID
GCF_003467725::NZ_QSHO01000001.1::G00003Context members
DW856_RS01235DW856_RS01240
Partner locus tags
DW856_RS01235DW856_RS01240
Partner old locus tags
DW856_01235DW856_01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118597006.1Primary protein accession used for annex mappings.
UniProt accessionA0A413ZE16Primary UniProt accession resolved in the annex database.
UniProt IDA0A413ZE16_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS01235Primary locus identifier stored in the genes table.
Old locus tagDW856_01235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000001.1Sequence record reported by the local genomic context database.
Genomic interval252 286-253 776 nt1 491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span252 286-254 440 ntGCF_003467725::NZ_QSHO01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span252 286-254 440 nt2 155 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 286 nt254 440 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW856_RS01235GCF_003467725#DW856_RS01235
HKClassicCurrent focus
252 286-253 776 nt · Reverse (-)
DW856_RS01240GCF_003467725#DW856_RS01240
RROmpR
253 766-254 440 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467725#DW856_RS01235The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1500001
Simplified PFAM architecture for HKOC_1500001
PFAM domain coverage: 226 / 496 aa (45.6%)
1 aa496 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[219-269] | HisKA[276-339] | HATPase_c[385-495]
- Domain count: 3
- Matched identifier: HKOC_1500001
- Positioned domains: HAMP 219-269 ; HisKA 276-339 ; HATPase_c 385-495
Cluster members and taxonomy
Representative gene: GCF_003467725#DW856_RS01235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key