1 Response_reg#1
6-110 aa · 105 aa · 18.9% of protein
Raw token
Response_reg:6:2.05e-27:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW864_RS15610
Response regulator, RpfG family
Thomasclavelia ramosa · GCF_003467635
ClassRRTypeRpfGLength555 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467635#DW864_RS15610Stable P2CS identifier used across views.
GenomeGCF_003467635Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length555 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 555 aa (68.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa555 aa
Domain-by-domain annotation3 items
2 HD#2
167-300 aa · 134 aa · 24.1% of protein
Raw token
HD:167:0.000000000000047:300:134:1103 GGDEF#3
390-532 aa · 143 aa · 25.8% of protein
Raw token
GGDEF:390:5.74e-38:532:156:160- Raw architecture: Response_reg:6:2.05e-27:110:106:111#HD:167:0.000000000000047:300:134:110#GGDEF:390:5.74e-38:532:156:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467635::NZ_QSHI01000030.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3451-8047Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW864_15610RefSeq proteinWP_118264139.1
Context group ID
GCF_003467635::NZ_QSHI01000030.1::G00019Context members
DW864_RS15600DW864_RS15610
Partner locus tags
DW864_RS15600DW864_RS15610
Partner old locus tags
DW864_15600DW864_15610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118264139.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW864_RS15610Primary locus identifier stored in the genes table.
Old locus tagDW864_15610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHI01000030.1Sequence record reported by the local genomic context database.
Genomic interval6 380-8 047 nt1 668 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 451-8 047 ntGCF_003467635::NZ_QSHI01000030.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467635::NZ_QSHI01000030.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHI01000030.1All displayed genes belong to this local TCS context.
Neighborhood span3 451-8 047 nt4 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 451 nt8 047 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW864_RS15600GCF_003467635#DW864_RS15600
HKHybrid
3 451-6 009 nt · Reverse (-)
DW864_RS15610GCF_003467635#DW864_RS15610
RRRpfGCurrent focus
6 380-8 047 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467635#DW864_RS15610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0066854
Simplified PFAM architecture for RROC_0066854
PFAM domain coverage: 382 / 555 aa (68.8%)
1 aa555 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-112] | HD_5[190-320] | GGDEF[390-533]
- Domain count: 3
- Matched identifier: RROC_0066854
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; HD_5 190-320 ; HD_5 190-320 ; GGDEF 390-533 ; GGDEF 390-533
Cluster members and taxonomy
Representative gene: GCF_003467635#DW864_RS15610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003467635
AssemblyASM346763v1 · Scaffoldhaploid
Genome composition3 364 706 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key