1 dCache_1#1
165-281 aa · 117 aa · 13.7% of protein
Raw token
dCache_1:165:0.0000281:281:118:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW864_RS15600
Histidine kinase, Hybrid
Thomasclavelia ramosa · GCF_003467635
ClassHKTypeHybridLength852 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467635#DW864_RS15600Stable P2CS identifier used across views.
GenomeGCF_003467635Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length852 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage537 / 852 aa (63.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa852 aa
Domain-by-domain annotation5 items
2 HisKA#2
344-410 aa · 67 aa · 7.9% of protein
Raw token
HisKA:344:4.65e-17:410:67:643 HATPase_c#3
458-576 aa · 119 aa · 14.0% of protein
Raw token
HATPase_c:458:3.75e-26:576:119:1094 Response_reg#4
592-707 aa · 116 aa · 13.6% of protein
Raw token
Response_reg:592:1.95e-22:707:116:1115 Response_reg#5
731-848 aa · 118 aa · 13.8% of protein
Raw token
Response_reg:731:7.29e-27:848:118:111- Raw architecture: dCache_1:165:0.0000281:281:118:195#HisKA:344:4.65e-17:410:67:64#HATPase_c:458:3.75e-26:576:119:109#Response_reg:592:1.95e-22:707:116:111#Response_reg:731:7.29e-27:848:118:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467635::NZ_QSHI01000030.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3451-8047Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW864_15600RefSeq proteinWP_118264137.1
Context group ID
GCF_003467635::NZ_QSHI01000030.1::G00019Context members
DW864_RS15600DW864_RS15610
Partner locus tags
DW864_RS15600DW864_RS15610
Partner old locus tags
DW864_15600DW864_15610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118264137.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW864_RS15600Primary locus identifier stored in the genes table.
Old locus tagDW864_15600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHI01000030.1Sequence record reported by the local genomic context database.
Genomic interval3 451-6 009 nt2 559 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 451-8 047 ntGCF_003467635::NZ_QSHI01000030.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467635::NZ_QSHI01000030.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHI01000030.1All displayed genes belong to this local TCS context.
Neighborhood span3 451-8 047 nt4 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 451 nt8 047 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW864_RS15600GCF_003467635#DW864_RS15600
HKHybridCurrent focus
3 451-6 009 nt · Reverse (-)
DW864_RS15610GCF_003467635#DW864_RS15610
RRRpfG
6 380-8 047 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467635#DW864_RS15600The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0485050
Simplified PFAM architecture for HKOC_0485050
PFAM domain coverage: 416 / 852 aa (48.8%)
1 aa852 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[344-410] | HATPase_c[458-575] | Response_reg[592-706] | Response_reg[731-846]
- Domain count: 4
- Matched identifier: HKOC_0485050
- Positioned domains: HisKA 344-410 ; HATPase_c 458-575 ; Response_reg 592-706 ; Response_reg 731-846
Cluster members and taxonomy
Representative gene: GCF_003467635#DW864_RS15600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003467635
AssemblyASM346763v1 · Scaffoldhaploid
Genome composition3 364 706 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key