1 HAMP#1
1-65 aa · 65 aa · 23.9% of protein
Raw token
HAMP:1:0.0000153:65:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW864_RS10190
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003467635
ClassHKTypeClassicLength272 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467635#DW864_RS10190Stable P2CS identifier used across views.
GenomeGCF_003467635Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage202 / 272 aa (74.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation3 items
2 HisKA#2
88-144 aa · 57 aa · 21.0% of protein
Raw token
HisKA:88:0.000000000000512:144:57:643 HATPase_c#3
193-272 aa · 80 aa · 29.4% of protein
Raw token
HATPase_c:193:0.00000000000776:272:85:109- Raw architecture: HAMP:1:0.0000153:65:65:69#HisKA:88:0.000000000000512:144:57:64#HATPase_c:193:0.00000000000776:272:85:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467635::NZ_QSHI01000012.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span41017-41835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW864_10190RefSeq proteinWP_118263926.1
Context group ID
GCF_003467635::NZ_QSHI01000012.1::G00004Context members
DW864_RS10190
Partner locus tags
DW864_RS10190
Partner old locus tags
DW864_10190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118263926.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW864_RS10190Primary locus identifier stored in the genes table.
Old locus tagDW864_10190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHI01000012.1Sequence record reported by the local genomic context database.
Genomic interval41 017-41 835 nt819 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 017-41 835 ntGCF_003467635::NZ_QSHI01000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467635::NZ_QSHI01000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHI01000012.1All displayed genes belong to this local TCS context.
Neighborhood span41 017-41 835 nt819 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 017 nt41 835 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW864_RS10190GCF_003467635#DW864_RS10190
HKClassicCurrent focus
41 017-41 835 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467635#DW864_RS10190The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2906359
Simplified PFAM architecture for HKOC_2906359
PFAM domain coverage: 137 / 272 aa (50.4%)
1 aa272 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-144] | HATPase_c[193-271]
- Domain count: 2
- Matched identifier: HKOC_2906359
- Positioned domains: HisKA 87-144 ; HATPase_c 193-271
Cluster members and taxonomy
Representative gene: GCF_003467635#DW864_RS10190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003467635
AssemblyASM346763v1 · Scaffoldhaploid
Genome composition3 364 706 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key