1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:7.54e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW864_RS04615
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003467635
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467635#DW864_RS04615Stable P2CS identifier used across views.
GenomeGCF_003467635Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-219 aa · 71 aa · 31.8% of protein
Raw token
Trans_reg_C:149:9.64e-25:219:73:77- Raw architecture: Response_reg:5:7.54e-41:114:111:111#Trans_reg_C:149:9.64e-25:219:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467635::NZ_QSHI01000003.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54042-56101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW864_04615RefSeq proteinWP_118263763.1
Context group ID
GCF_003467635::NZ_QSHI01000003.1::G00018Context members
DW864_RS04610DW864_RS04615
Partner locus tags
DW864_RS04610DW864_RS04615
Partner old locus tags
DW864_04610DW864_04615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118263763.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW864_RS04615Primary locus identifier stored in the genes table.
Old locus tagDW864_04615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHI01000003.1Sequence record reported by the local genomic context database.
Genomic interval55 430-56 101 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 042-56 101 ntGCF_003467635::NZ_QSHI01000003.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467635::NZ_QSHI01000003.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span54 042-56 101 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 042 nt56 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW864_RS04610GCF_003467635#DW864_RS04610
HKClassic
54 042-55 433 nt · Reverse (-)
DW864_RS04615GCF_003467635#DW864_RS04615
RROmpRCurrent focus
55 430-56 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467635#DW864_RS04615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600228
Simplified PFAM architecture for RROC_1600228
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_1600228
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_003467635#DW864_RS04615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003467635
AssemblyASM346763v1 · Scaffoldhaploid
Genome composition3 364 706 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key