1 Response_reg#1
39-149 aa · 111 aa · 43.7% of protein
Raw token
Response_reg:39:1.48e-30:149:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW872_RS05315
Response regulator, AmiR_NasR family
Bifidobacterium pseudocatenulatum · GCF_003467515
ClassRRTypeAmiR_NasRLength254 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467515#DW872_RS05315Stable P2CS identifier used across views.
GenomeGCF_003467515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 254 aa (63.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa254 aa
Domain-by-domain annotation2 items
2 ANTAR#2
192-240 aa · 49 aa · 19.3% of protein
Raw token
ANTAR:192:6.27e-16:240:49:49- Raw architecture: Response_reg:39:1.48e-30:149:112:111#ANTAR:192:6.27e-16:240:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467515::NZ_QSHB01000003.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89015-89779Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW872_05305RefSeq proteinWP_055063191.1
Context group ID
GCF_003467515::NZ_QSHB01000003.1::G00012Context members
DW872_RS05315
Partner locus tags
DW872_RS05315
Partner old locus tags
DW872_05305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055063191.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY6Y922Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY6Y922_BIFPSDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW872_RS05315Primary locus identifier stored in the genes table.
Old locus tagDW872_05305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHB01000003.1Sequence record reported by the local genomic context database.
Genomic interval89 015-89 779 nt765 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 015-89 779 ntGCF_003467515::NZ_QSHB01000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467515::NZ_QSHB01000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span89 015-89 779 nt765 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 015 nt89 779 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW872_RS05315GCF_003467515#DW872_RS05315
RRAmiR_NasRCurrent focus
89 015-89 779 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405035#ARA38_RS03985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0688542
Simplified PFAM architecture for RROC_0688542
PFAM domain coverage: 163 / 254 aa (64.2%)
1 aa254 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[39-148] | ANTAR[188-240]
- Domain count: 2
- Matched identifier: RROC_0688542
- Positioned domains: Response_reg 39-148 ; Response_reg 39-148 ; ANTAR 188-240 ; ANTAR 188-240
Cluster members and taxonomy
Representative gene: GCF_001405035#ARA38_RS03985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003467515
AssemblyASM346751v1 · Scaffoldhaploid
Genome composition2 309 250 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key