1 Response_reg#1
3-103 aa · 101 aa · 46.1% of protein
Raw token
Response_reg:3:1.01e-24:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW872_RS04045
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003467515
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467515#DW872_RS04045Stable P2CS identifier used across views.
GenomeGCF_003467515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 219 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-213 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:158:1.2e-20:213:56:58- Raw architecture: Response_reg:3:1.01e-24:103:101:111#HTH_LUXR:158:1.2e-20:213:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467515::NZ_QSHB01000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span263946-265954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW872_04035RefSeq proteinWP_117783705.1
Context group ID
GCF_003467515::NZ_QSHB01000002.1::G00007Context members
DW872_RS04040DW872_RS04045
Partner locus tags
DW872_RS04040DW872_RS04045
Partner old locus tags
DW872_04030DW872_04035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117783705.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW872_RS04045Primary locus identifier stored in the genes table.
Old locus tagDW872_04035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHB01000002.1Sequence record reported by the local genomic context database.
Genomic interval265 295-265 954 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span263 946-265 954 ntGCF_003467515::NZ_QSHB01000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467515::NZ_QSHB01000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span263 946-265 954 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
263 946 nt265 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW872_RS04040GCF_003467515#DW872_RS04040
HKClassic
263 946-265 295 nt · Forward (+)
DW872_RS04045GCF_003467515#DW872_RS04045
RRNarLCurrent focus
265 295-265 954 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467515#DW872_RS04045The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1777289
Simplified PFAM architecture for RROC_1777289
PFAM domain coverage: 156 / 219 aa (71.2%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1777289
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_003467515#DW872_RS04045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003467515
AssemblyASM346751v1 · Scaffoldhaploid
Genome composition2 309 250 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key