1 Response_reg#1
14-127 aa · 114 aa · 52.1% of protein
Raw token
Response_reg:14:0.00000000000000336:127:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW872_RS02380
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003467515
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467515#DW872_RS02380Stable P2CS identifier used across views.
GenomeGCF_003467515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 219 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
157-212 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:157:8.26e-18:212:56:58- Raw architecture: Response_reg:14:0.00000000000000336:127:115:111#HTH_LUXR:157:8.26e-18:212:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467515::NZ_QSHB01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span555165-555824Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW872_02375RefSeq proteinWP_022244653.1
Context group ID
GCF_003467515::NZ_QSHB01000001.1::G00004Context members
DW872_RS02380
Partner locus tags
DW872_RS02380
Partner old locus tags
DW872_02375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022244653.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY6YDW4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY6YDW4_BIFPSDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW872_RS02380Primary locus identifier stored in the genes table.
Old locus tagDW872_02375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHB01000001.1Sequence record reported by the local genomic context database.
Genomic interval555 165-555 824 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span555 165-555 824 ntGCF_003467515::NZ_QSHB01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467515::NZ_QSHB01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span555 165-555 824 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
555 165 nt555 824 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW872_RS02380GCF_003467515#DW872_RS02380
RRNarLCurrent focus
555 165-555 824 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000708005#AW18_RS04320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1770059
Simplified PFAM architecture for RROC_1770059
PFAM domain coverage: 167 / 219 aa (76.3%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[14-126] | GerE[158-211]
- Domain count: 2
- Matched identifier: RROC_1770059
- Positioned domains: Response_reg 14-126 ; Response_reg 14-126 ; GerE 158-211 ; GerE 158-211
Cluster members and taxonomy
Representative gene: GCF_000708005#AW18_RS04320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003467515
AssemblyASM346751v1 · Scaffoldhaploid
Genome composition2 309 250 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key