1 Response_reg#1
5-112 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:5:2.13e-31:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW897_RS05855
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_003467335
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467335#DW897_RS05855Stable P2CS identifier used across views.
GenomeGCF_003467335Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:8.49e-32:221:77:77- Raw architecture: Response_reg:5:2.13e-31:112:109:111#Trans_reg_C:148:8.49e-32:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467335::NZ_QSGI01000003.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span181978-184877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW897_05855RefSeq proteinWP_117515285.1
Context group ID
GCF_003467335::NZ_QSGI01000003.1::G00012Context members
DW897_RS05850DW897_RS05855
Partner locus tags
DW897_RS05850DW897_RS05855
Partner old locus tags
DW897_05850DW897_05855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117515285.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW897_RS05855Primary locus identifier stored in the genes table.
Old locus tagDW897_05855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSGI01000003.1Sequence record reported by the local genomic context database.
Genomic interval184 206-184 877 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span181 978-184 877 ntGCF_003467335::NZ_QSGI01000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467335::NZ_QSGI01000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSGI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span181 978-184 877 nt2 900 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 978 nt184 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW897_RS05850GCF_003467335#DW897_RS05850
HKClassic
181 978-184 203 nt · Reverse (-)
DW897_RS05855GCF_003467335#DW897_RS05855
RROmpRCurrent focus
184 206-184 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435375#DW826_RS03765Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600085
Simplified PFAM architecture for RROC_1600085
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1600085
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_003435375#DW826_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003467335
AssemblyASM346733v1 · Scaffoldhaploid
Genome composition2 094 567 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key