1 Response_reg#1
27-138 aa · 112 aa · 46.5% of protein
Raw token
Response_reg:27:6.43e-28:138:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD44_RS07195
Response regulator NarL family
Bifidobacterium longum · GCF_003466505
ClassRRTypeNarLLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466505#DXD44_RS07195Stable P2CS identifier used across views.
GenomeGCF_003466505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 241 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
176-232 aa · 57 aa · 23.7% of protein
Raw token
HTH_LUXR:176:0.00000000000000783:232:58:58- Raw architecture: Response_reg:27:6.43e-28:138:112:111#HTH_LUXR:176:0.00000000000000783:232:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466505::NZ_QSPR01000004.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58497-60489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD44_07195RefSeq proteinWP_117768637.1
Context group ID
GCF_003466505::NZ_QSPR01000004.1::G00009Context members
DXD44_RS07190DXD44_RS07195
Partner locus tags
DXD44_RS07190DXD44_RS07195
Partner old locus tags
DXD44_07190DXD44_07195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117768637.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD44_RS07195Primary locus identifier stored in the genes table.
Old locus tagDXD44_07195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPR01000004.1Sequence record reported by the local genomic context database.
Genomic interval59 764-60 489 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 497-60 489 ntGCF_003466505::NZ_QSPR01000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466505::NZ_QSPR01000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPR01000004.1All displayed genes belong to this local TCS context.
Neighborhood span58 497-60 489 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 497 nt60 489 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD44_RS07190GCF_003466505#DXD44_RS07190
HKClassic
58 497-59 729 nt · Forward (+)
DXD44_RS07195GCF_003466505#DXD44_RS07195
RRNarLCurrent focus
59 764-60 489 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466505#DXD44_RS07195The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867752
Simplified PFAM architecture for RROC_0867752
PFAM domain coverage: 166 / 241 aa (68.9%)
1 aa241 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[25-138] | Sigma70_r4_2[170-221]
- Domain count: 2
- Matched identifier: RROC_0867752
- Positioned domains: Response_reg 25-138 ; Response_reg 25-138 ; Sigma70_r4_2 170-221 ; Sigma70_r4_2 170-221
Cluster members and taxonomy
Representative gene: GCF_003466505#DXD44_RS07195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003466505
AssemblyASM346650v1 · Scaffoldhaploid
Genome composition2 506 808 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key