1 Response_reg#1
4-112 aa · 109 aa · 45.4% of protein
Raw token
Response_reg:4:4.51e-34:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD52_RS04070
Response regulator OmpR family
Bifidobacterium longum · GCF_003466425
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466425#DXD52_RS04070Stable P2CS identifier used across views.
GenomeGCF_003466425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 240 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-235 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:159:7.3e-33:235:77:77- Raw architecture: Response_reg:4:4.51e-34:112:110:111#Trans_reg_C:159:7.3e-33:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466425::NZ_QSPJ01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119862-122278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD52_04070RefSeq proteinWP_007053219.1
Context group ID
GCF_003466425::NZ_QSPJ01000002.1::G00004Context members
DXD52_RS04065DXD52_RS04070
Partner locus tags
DXD52_RS04065DXD52_RS04070
Partner old locus tags
DXD52_04065DXD52_04070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007053219.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FJZ0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FJZ0_BIFLLDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD52_RS04070Primary locus identifier stored in the genes table.
Old locus tagDXD52_04070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval121 556-122 278 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 862-122 278 ntGCF_003466425::NZ_QSPJ01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466425::NZ_QSPJ01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span119 862-122 278 nt2 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 862 nt122 278 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD52_RS04065GCF_003466425#DXD52_RS04065
HKClassic
119 862-121 559 nt · Reverse (-)
DXD52_RS04070GCF_003466425#DXD52_RS04070
RROmpRCurrent focus
121 556-122 278 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155415#BLIG_RS00520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882195
Simplified PFAM architecture for RROC_0882195
PFAM domain coverage: 186 / 240 aa (77.5%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[159-235]
- Domain count: 2
- Matched identifier: RROC_0882195
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 159-235 ; Trans_reg_C 159-235
Cluster members and taxonomy
Representative gene: GCF_000155415#BLIG_RS00520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003466425
AssemblyASM346642v1 · Scaffoldhaploid
Genome composition2 404 043 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key