1 dCache_1#1
158-306 aa · 149 aa · 23.8% of protein
Raw token
dCache_1:158:0.00000000000948:306:157:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS11235
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeClassicLength627 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS11235Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length627 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage335 / 627 aa (53.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa627 aa
Domain-by-domain annotation3 items
2 His_kinase#2
408-487 aa · 80 aa · 12.8% of protein
Raw token
His_kinase:408:2.86e-33:487:80:803 HATPase_c#3
503-608 aa · 106 aa · 16.9% of protein
Raw token
HATPase_c:503:1.23e-17:608:109:109- Raw architecture: dCache_1:158:0.00000000000948:306:157:195#His_kinase:408:2.86e-33:487:80:80#HATPase_c:503:1.23e-17:608:109:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000084.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6157-9625Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_11220RefSeq proteinWP_187307948.1
Context group ID
GCF_003466185::NZ_QSOE01000084.1::G00045Context members
DXD91_RS11230DXD91_RS11235
Partner locus tags
DXD91_RS11230DXD91_RS11235
Partner old locus tags
DXD91_11215DXD91_11220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_187307948.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS11235Primary locus identifier stored in the genes table.
Old locus tagDXD91_11220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000084.1Sequence record reported by the local genomic context database.
Genomic interval7 742-9 625 nt1 884 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 157-9 625 ntGCF_003466185::NZ_QSOE01000084.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000084.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000084.1All displayed genes belong to this local TCS context.
Neighborhood span6 157-9 625 nt3 469 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 157 nt9 625 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS11230GCF_003466185#DXD91_RS11230
RRunclassified
6 157-7 755 nt · Forward (+)
DXD91_RS11235GCF_003466185#DXD91_RS11235
HKClassicCurrent focus
7 742-9 625 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS11235The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0955812
Simplified PFAM architecture for HKOC_0955812
PFAM domain coverage: 420 / 627 aa (67.0%)
1 aa627 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[71-306] | His_kinase[409-487] | HATPase_c[505-609]
- Domain count: 3
- Matched identifier: HKOC_0955812
- Positioned domains: dCache_1 71-306 ; His_kinase 409-487 ; HATPase_c 505-609
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS11235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key