1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.61e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS09470
Response regulator OmpR family
Anaerobutyricum hallii · GCF_003466185
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS09470Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:148:2.99e-25:221:76:77- Raw architecture: Response_reg:4:1.61e-33:113:111:111#Trans_reg_C:148:2.99e-25:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000059.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13061-14778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_09455RefSeq proteinWP_117738823.1
Context group ID
GCF_003466185::NZ_QSOE01000059.1::G00042Context members
DXD91_RS09470DXD91_RS09475
Partner locus tags
DXD91_RS09470DXD91_RS09475
Partner old locus tags
DXD91_09455DXD91_09460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117738823.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NJY6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NJY6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS09470Primary locus identifier stored in the genes table.
Old locus tagDXD91_09455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000059.1Sequence record reported by the local genomic context database.
Genomic interval13 061-13 735 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 061-14 778 ntGCF_003466185::NZ_QSOE01000059.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000059.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000059.1All displayed genes belong to this local TCS context.
Neighborhood span13 061-14 778 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 061 nt14 778 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS09470GCF_003466185#DXD91_RS09470
RROmpRCurrent focus
13 061-13 735 nt · Forward (+)
DXD91_RS09475GCF_003466185#DXD91_RS09475
HKClassic
13 969-14 778 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS03205Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0759514
Simplified PFAM architecture for RROC_0759514
PFAM domain coverage: 182 / 247 aa (73.7%)
1 aa247 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[27-135] | Trans_reg_C[171-243]
- Domain count: 2
- Matched identifier: RROC_0759514
- Positioned domains: Response_reg 27-135 ; Response_reg 27-135 ; Trans_reg_C 171-243 ; Trans_reg_C 171-243
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS03205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key