1 HisKA#1
76-140 aa · 65 aa · 9.2% of protein
Raw token
HisKA:76:6.01e-18:140:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS07975
Histidine kinase, Hybrid
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeHybridLength704 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS07975Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length704 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 704 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa704 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
188-298 aa · 111 aa · 15.8% of protein
Raw token
HATPase_c:188:1.4e-34:298:111:1093 Response_reg#3
330-441 aa · 112 aa · 15.9% of protein
Raw token
Response_reg:330:1.89e-25:441:112:111- Raw architecture: HisKA:76:6.01e-18:140:65:64#HATPase_c:188:1.4e-34:298:111:109#Response_reg:330:1.89e-25:441:112:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000043.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9722-12437Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_07960RefSeq proteinWP_243008548.1
Context group ID
GCF_003466185::NZ_QSOE01000043.1::G00035Context members
DXD91_RS07970DXD91_RS07975
Partner locus tags
DXD91_RS07970DXD91_RS07975
Partner old locus tags
DXD91_07955DXD91_07960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243008548.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS07975Primary locus identifier stored in the genes table.
Old locus tagDXD91_07960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000043.1Sequence record reported by the local genomic context database.
Genomic interval10 323-12 437 nt2 115 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 722-12 437 ntGCF_003466185::NZ_QSOE01000043.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000043.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000043.1All displayed genes belong to this local TCS context.
Neighborhood span9 722-12 437 nt2 716 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 722 nt12 437 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS07970GCF_003466185#DXD91_RS07970
RRNarL
9 722-10 336 nt · Reverse (-)
DXD91_RS07975GCF_003466185#DXD91_RS07975
HKHybridCurrent focus
10 323-12 437 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS07975The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0761120
Simplified PFAM architecture for HKOC_0761120
PFAM domain coverage: 286 / 704 aa (40.6%)
1 aa704 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[76-140] | HATPase_c[188-298] | Response_reg[330-439]
- Domain count: 3
- Matched identifier: HKOC_0761120
- Positioned domains: HisKA 76-140 ; HATPase_c 188-298 ; Response_reg 330-439
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS07975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key