1 Response_reg#1
6-121 aa · 116 aa · 42.6% of protein
Raw token
Response_reg:6:1.53e-27:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS07680
Response regulator Spo0A family
Anaerobutyricum hallii · GCF_003466185
ClassRRTypeSpo0ALength272 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS07680Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 272 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
155-258 aa · 104 aa · 38.2% of protein
Raw token
Spo0A_C:155:1.25e-62:258:104:104- Raw architecture: Response_reg:6:1.53e-27:121:116:111#Spo0A_C:155:1.25e-62:258:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000040.1::G00034
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span15711-17389Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_07665RefSeq proteinWP_005348394.1
Context group ID
GCF_003466185::NZ_QSOE01000040.1::G00034Context members
DXD91_RS07675DXD91_RS07680
Partner locus tags
DXD91_RS07675DXD91_RS07680
Partner old locus tags
DXD91_07660DXD91_07665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005348394.1Primary protein accession used for annex mappings.
UniProt accessionC0EXA4Primary UniProt accession resolved in the annex database.
UniProt IDC0EXA4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS07680Primary locus identifier stored in the genes table.
Old locus tagDXD91_07665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000040.1Sequence record reported by the local genomic context database.
Genomic interval16 571-17 389 nt819 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 711-17 389 ntGCF_003466185::NZ_QSOE01000040.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000040.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000040.1All displayed genes belong to this local TCS context.
Neighborhood span15 711-17 389 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 711 nt17 389 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS07675GCF_003466185#DXD91_RS07675
RRSpo0A
15 711-16 547 nt · Reverse (-)
DXD91_RS07680GCF_003466185#DXD91_RS07680
RRSpo0ACurrent focus
16 571-17 389 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS09090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0609877
Simplified PFAM architecture for RROC_0609877
PFAM domain coverage: 220 / 272 aa (80.9%)
1 aa272 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[155-258]
- Domain count: 2
- Matched identifier: RROC_0609877
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 155-258 ; Spo0A_C 155-258
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS09090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key