1 HAMP#1
1-54 aa · 54 aa · 18.6% of protein
Raw token
HAMP:1:0.0000000000342:54:54:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS07385
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeClassicLength291 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003466185#DXD91_RS07385Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length291 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage212 / 291 aa (72.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa291 aa
Domain-by-domain annotation3 items
2 HisKA#2
66-119 aa · 54 aa · 18.6% of protein
Raw token
HisKA:66:0.00000000347:119:54:643 HATPase_c#3
177-280 aa · 104 aa · 35.7% of protein
Raw token
HATPase_c:177:3.73e-25:280:105:109- Raw architecture: HAMP:1:0.0000000000342:54:54:69#HisKA:66:0.00000000347:119:54:64#HATPase_c:177:3.73e-25:280:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003466185::NZ_QSOE01000038.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9662-10537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_07370RefSeq proteinWP_330423841.1
Context group ID
GCF_003466185::NZ_QSOE01000038.1::G00033Context members
DXD91_RS07385
Partner locus tags
DXD91_RS07385
Partner old locus tags
DXD91_07370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330423841.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS07385Primary locus identifier stored in the genes table.
Old locus tagDXD91_07370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000038.1Sequence record reported by the local genomic context database.
Genomic interval9 662-10 537 nt876 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 662-10 537 ntGCF_003466185::NZ_QSOE01000038.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000038.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000038.1All displayed genes belong to this local TCS context.
Neighborhood span9 662-10 537 nt876 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 662 nt10 537 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD91_RS07385GCF_003466185#DXD91_RS07385
HKClassicCurrent focus
9 662-10 537 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS07385The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2895249
Simplified PFAM architecture for HKOC_2895249
PFAM domain coverage: 213 / 291 aa (73.2%)
1 aa291 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[7-54] | HisKA[67-127] | HATPase_c[178-281]
- Domain count: 3
- Matched identifier: HKOC_2895249
- Positioned domains: HAMP 7-54 ; HisKA 67-127 ; HATPase_c 178-281
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS07385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key