1 PAS_3#1
165-227 aa · 63 aa · 9.8% of protein
Raw token
PAS_3:165:0.0000039:227:68:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS06995
Histidine kinase, Hybrid
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeHybridLength643 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003466185#DXD91_RS06995Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length643 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage365 / 643 aa (56.8%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa643 aa
Domain-by-domain annotation4 items
2 HisKA#2
253-319 aa · 67 aa · 10.4% of protein
Raw token
HisKA:253:5.73e-16:319:67:643 HATPase_c#3
368-485 aa · 118 aa · 18.4% of protein
Raw token
HATPase_c:368:5.47e-28:485:118:1094 Response_reg#4
512-628 aa · 117 aa · 18.2% of protein
Raw token
Response_reg:512:2.24e-25:628:117:111- Raw architecture: PAS_3:165:0.0000039:227:68:89#HisKA:253:5.73e-16:319:67:64#HATPase_c:368:5.47e-28:485:118:109#Response_reg:512:2.24e-25:628:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003466185::NZ_QSOE01000035.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span21837-23768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_06980RefSeq proteinWP_117982476.1
Context group ID
GCF_003466185::NZ_QSOE01000035.1::G00028Context members
DXD91_RS06995
Partner locus tags
DXD91_RS06995
Partner old locus tags
DXD91_06980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117982476.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NPE1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NPE1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS06995Primary locus identifier stored in the genes table.
Old locus tagDXD91_06980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000035.1Sequence record reported by the local genomic context database.
Genomic interval21 837-23 768 nt1 932 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 837-23 768 ntGCF_003466185::NZ_QSOE01000035.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000035.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000035.1All displayed genes belong to this local TCS context.
Neighborhood span21 837-23 768 nt1 932 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 837 nt23 768 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD91_RS06995GCF_003466185#DXD91_RS06995
HKHybridCurrent focus
21 837-23 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS06995The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0913713
Simplified PFAM architecture for HKOC_0913713
PFAM domain coverage: 299 / 643 aa (46.5%)
1 aa643 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[253-319] | HATPase_c[369-484] | Response_reg[512-627]
- Domain count: 3
- Matched identifier: HKOC_0913713
- Positioned domains: HisKA 253-319 ; HATPase_c 369-484 ; Response_reg 512-627
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS06995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key