1 GGDEF#1
134-274 aa · 141 aa · 21.0% of protein
Raw token
GGDEF:134:2.68e-43:274:153:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS06260
Response regulator, RpfG family
Anaerobutyricum hallii · GCF_003466185
ClassRRTypeRpfGLength671 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003466185#DXD91_RS06260Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 671 aa (56.9%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation3 items
2 Response_reg#2
302-408 aa · 107 aa · 15.9% of protein
Raw token
Response_reg:302:1.34e-25:408:108:1113 HD#3
462-595 aa · 134 aa · 20.0% of protein
Raw token
HD:462:2.88e-16:595:134:110- Raw architecture: GGDEF:134:2.68e-43:274:153:160#Response_reg:302:1.34e-25:408:108:111#HD:462:2.88e-16:595:134:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003466185::NZ_QSOE01000029.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26958-28973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_06250RefSeq proteinWP_022169519.1
Context group ID
GCF_003466185::NZ_QSOE01000029.1::G00022Context members
DXD91_RS06260
Partner locus tags
DXD91_RS06260
Partner old locus tags
DXD91_06250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022169519.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NR10Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NR10_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS06260Primary locus identifier stored in the genes table.
Old locus tagDXD91_06250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000029.1Sequence record reported by the local genomic context database.
Genomic interval26 958-28 973 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 958-28 973 ntGCF_003466185::NZ_QSOE01000029.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000029.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000029.1All displayed genes belong to this local TCS context.
Neighborhood span26 958-28 973 nt2 016 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 958 nt28 973 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD91_RS06260GCF_003466185#DXD91_RS06260
RRRpfGCurrent focus
26 958-28 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS06260The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0034080
Simplified PFAM architecture for RROC_0034080
PFAM domain coverage: 384 / 671 aa (57.2%)
1 aa671 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[134-277] | Response_reg[302-411] | HD_5[486-615]
- Domain count: 3
- Matched identifier: RROC_0034080
- Positioned domains: GGDEF 134-277 ; GGDEF 134-277 ; Response_reg 302-411 ; Response_reg 302-411 ; HD_5 486-615 ; HD_5 486-615
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS06260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key