1 GAF_3#1
154-277 aa · 124 aa · 23.7% of protein
Raw token
GAF_3:154:0.0000000164:277:130:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS05520
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeClassicLength524 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS05520Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length524 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage305 / 524 aa (58.2%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa524 aa
Domain-by-domain annotation3 items
2 HisKA#2
297-364 aa · 68 aa · 13.0% of protein
Raw token
HisKA:297:0.0000000000214:364:69:643 HATPase_c#3
407-519 aa · 113 aa · 21.6% of protein
Raw token
HATPase_c:407:2.02e-28:519:113:109- Raw architecture: GAF_3:154:0.0000000164:277:130:129#HisKA:297:0.0000000000214:364:69:64#HATPase_c:407:2.02e-28:519:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000024.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29692-31960Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_05515RefSeq proteinWP_117982311.1
Context group ID
GCF_003466185::NZ_QSOE01000024.1::G00020Context members
DXD91_RS05515DXD91_RS05520
Partner locus tags
DXD91_RS05515DXD91_RS05520
Partner old locus tags
DXD91_05510DXD91_05515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117982311.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NSN1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NSN1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS05520Primary locus identifier stored in the genes table.
Old locus tagDXD91_05515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000024.1Sequence record reported by the local genomic context database.
Genomic interval30 386-31 960 nt1 575 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 692-31 960 ntGCF_003466185::NZ_QSOE01000024.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000024.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000024.1All displayed genes belong to this local TCS context.
Neighborhood span29 692-31 960 nt2 269 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 692 nt31 960 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS05515GCF_003466185#DXD91_RS05515
RROmpR
29 692-30 393 nt · Reverse (-)
DXD91_RS05520GCF_003466185#DXD91_RS05520
HKClassicCurrent focus
30 386-31 960 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS05520The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1377785
Simplified PFAM architecture for HKOC_1377785
PFAM domain coverage: 282 / 524 aa (53.8%)
1 aa524 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[29-131] | HisKA[297-364] | HATPase_c[408-518]
- Domain count: 3
- Matched identifier: HKOC_1377785
- Positioned domains: DUF4118 29-131 ; HisKA 297-364 ; HATPase_c 408-518
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS05520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key