1 HisKA_3#1
240-307 aa · 68 aa · 14.8% of protein
Raw token
HisKA_3:240:3.76e-23:307:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS04360
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS04360Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 458 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
350-433 aa · 84 aa · 18.3% of protein
Raw token
HATPase_c:350:0.00000000000000996:433:104:109- Raw architecture: HisKA_3:240:3.76e-23:307:68:68#HATPase_c:350:0.00000000000000996:433:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000018.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4905-7078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_04355RefSeq proteinWP_117982173.1
Context group ID
GCF_003466185::NZ_QSOE01000018.1::G00012Context members
DXD91_RS04355DXD91_RS04360
Partner locus tags
DXD91_RS04355DXD91_RS04360
Partner old locus tags
DXD91_04350DXD91_04355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117982173.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NTU3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NTU3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS04360Primary locus identifier stored in the genes table.
Old locus tagDXD91_04355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000018.1Sequence record reported by the local genomic context database.
Genomic interval5 702-7 078 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 905-7 078 ntGCF_003466185::NZ_QSOE01000018.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000018.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000018.1All displayed genes belong to this local TCS context.
Neighborhood span4 905-7 078 nt2 174 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 905 nt7 078 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS04355GCF_003466185#DXD91_RS04355
RRNarL
4 905-5 576 nt · Reverse (-)
DXD91_RS04360GCF_003466185#DXD91_RS04360
HKClassicCurrent focus
5 702-7 078 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS04360The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1862500
Simplified PFAM architecture for HKOC_1862500
PFAM domain coverage: 153 / 458 aa (33.4%)
1 aa458 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[240-307] | HATPase_c[347-431]
- Domain count: 2
- Matched identifier: HKOC_1862500
- Positioned domains: HisKA_3 240-307 ; HATPase_c 347-431
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS04360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key