1 HAMP#1
155-224 aa · 70 aa · 15.0% of protein
Raw token
HAMP:155:0.00000000000152:224:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS04140
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS04140Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 467 aa (51.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-315 aa · 67 aa · 14.3% of protein
Raw token
HisKA:249:0.0000000000247:315:67:643 HATPase_c#3
360-460 aa · 101 aa · 21.6% of protein
Raw token
HATPase_c:360:6.3e-27:460:101:109- Raw architecture: HAMP:155:0.00000000000152:224:70:69#HisKA:249:0.0000000000247:315:67:64#HATPase_c:360:6.3e-27:460:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000017.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5399-7457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_04140RefSeq proteinWP_117982156.1
Context group ID
GCF_003466185::NZ_QSOE01000017.1::G00011Context members
DXD91_RS04140DXD91_RS04145
Partner locus tags
DXD91_RS04140DXD91_RS04145
Partner old locus tags
DXD91_04140DXD91_04145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117982156.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NV81Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NV81_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS04140Primary locus identifier stored in the genes table.
Old locus tagDXD91_04140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000017.1Sequence record reported by the local genomic context database.
Genomic interval5 399-6 802 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 399-7 457 ntGCF_003466185::NZ_QSOE01000017.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000017.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000017.1All displayed genes belong to this local TCS context.
Neighborhood span5 399-7 457 nt2 059 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 399 nt7 457 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS04140GCF_003466185#DXD91_RS04140
HKClassicCurrent focus
5 399-6 802 nt · Reverse (-)
DXD91_RS04145GCF_003466185#DXD91_RS04145
RROmpR
6 780-7 457 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS04140The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1751306
Simplified PFAM architecture for HKOC_1751306
PFAM domain coverage: 214 / 467 aa (45.8%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[172-223] | HisKA[250-314] | HATPase_c[363-459]
- Domain count: 3
- Matched identifier: HKOC_1751306
- Positioned domains: HAMP 172-223 ; HisKA 250-314 ; HATPase_c 363-459
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS04140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key