1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000594:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV39_RS07095
Histidine kinase, Classic
Bifidobacterium longum · GCF_003465635
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003465635#DWV39_RS07095Stable P2CS identifier used across views.
GenomeGCF_003465635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000324:392:86:109- Raw architecture: HisKA_3:201:0.0000000594:265:65:68#HATPase_c:322:0.0000324:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003465635::NZ_QSBF01000005.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144770-146762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV39_07095RefSeq proteinWP_007054471.1
Context group ID
GCF_003465635::NZ_QSBF01000005.1::G00008Context members
DWV39_RS07090DWV39_RS07095
Partner locus tags
DWV39_RS07090DWV39_RS07095
Partner old locus tags
DWV39_07090DWV39_07095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_007054471.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV39_RS07095Primary locus identifier stored in the genes table.
Old locus tagDWV39_07095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSBF01000005.1Sequence record reported by the local genomic context database.
Genomic interval145 530-146 762 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span144 770-146 762 ntGCF_003465635::NZ_QSBF01000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003465635::NZ_QSBF01000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSBF01000005.1All displayed genes belong to this local TCS context.
Neighborhood span144 770-146 762 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 770 nt146 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV39_RS07090GCF_003465635#DWV39_RS07090
RRNarL
144 770-145 495 nt · Reverse (-)
DWV39_RS07095GCF_003465635#DWV39_RS07095
HKClassicCurrent focus
145 530-146 762 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS02665Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2354145
Simplified PFAM architecture for HKOC_2354145
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2354145
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS02665
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 6 over 6 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003465635
AssemblyASM346563v1 · Scaffoldhaploid
Genome composition2 426 911 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key