1 Response_reg#1
6-116 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:6:0.00000000000000701:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV51_RS14865
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_003465525
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003465525#DWV51_RS14865Stable P2CS identifier used across views.
GenomeGCF_003465525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 232 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-227 aa · 84 aa · 36.2% of protein
Raw token
LytTR:144:2.69e-20:227:89:98- Raw architecture: Response_reg:6:0.00000000000000701:116:115:111#LytTR:144:2.69e-20:227:89:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003465525::NZ_QSAW01000027.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5074-5772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV51_14870RefSeq proteinWP_117950518.1
Context group ID
GCF_003465525::NZ_QSAW01000027.1::G00031Context members
DWV51_RS14865
Partner locus tags
DWV51_RS14865
Partner old locus tags
DWV51_14870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117950518.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV51_RS14865Primary locus identifier stored in the genes table.
Old locus tagDWV51_14870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAW01000027.1Sequence record reported by the local genomic context database.
Genomic interval5 074-5 772 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 074-5 772 ntGCF_003465525::NZ_QSAW01000027.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003465525::NZ_QSAW01000027.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAW01000027.1All displayed genes belong to this local TCS context.
Neighborhood span5 074-5 772 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 074 nt5 772 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV51_RS14865GCF_003465525#DWV51_RS14865
RRLytTRCurrent focus
5 074-5 772 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465525#DWV51_RS14865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129422
Simplified PFAM architecture for RROC_1129422
PFAM domain coverage: 200 / 232 aa (86.2%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1129422
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_003465525#DWV51_RS14865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003465525
AssemblyASM346552v1 · Scaffoldhaploid
Genome composition3 126 281 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 29 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key