1 Response_reg#1
1-108 aa · 108 aa · 94.7% of protein
Raw token
Response_reg:1:0.0000000000235:108:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV51_RS03265
Response regulator, CheY family
Faecalibacterium prausnitzii · GCF_003465525
ClassRRTypeCheYLength114 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003465525#DWV51_RS03265Stable P2CS identifier used across views.
GenomeGCF_003465525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length114 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 114 aa (94.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa114 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:0.0000000000235:108:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003465525::NZ_QSAW01000002.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10864-11208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV51_03265RefSeq proteinWP_182398518.1
Context group ID
GCF_003465525::NZ_QSAW01000002.1::G00020Context members
DWV51_RS03265
Partner locus tags
DWV51_RS03265
Partner old locus tags
DWV51_03265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182398518.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV51_RS03265Primary locus identifier stored in the genes table.
Old locus tagDWV51_03265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAW01000002.1Sequence record reported by the local genomic context database.
Genomic interval10 864-11 208 nt345 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 864-11 208 ntGCF_003465525::NZ_QSAW01000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003465525::NZ_QSAW01000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span10 864-11 208 nt345 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 864 nt11 208 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV51_RS03265GCF_003465525#DWV51_RS03265
RRCheYCurrent focus
10 864-11 208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465525#DWV51_RS03265The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2466568
Simplified PFAM architecture for RROC_2466568
PFAM domain coverage: 103 / 114 aa (90.4%)
1 aa114 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-104]
- Domain count: 1
- Matched identifier: RROC_2466568
- Positioned domains: Response_reg 2-104 ; Response_reg 2-104
Cluster members and taxonomy
Representative gene: GCF_003465525#DWV51_RS03265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003465525
AssemblyASM346552v1 · Scaffoldhaploid
Genome composition3 126 281 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 29 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key