1 HisKA_3#1
244-302 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:244:4.84e-16:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV59_RS03970
Histidine kinase, Classic
Bifidobacterium longum · GCF_003465455
ClassHKTypeClassicLength815 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003465455#DWV59_RS03970Stable P2CS identifier used across views.
GenomeGCF_003465455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length815 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 815 aa (27.2%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa815 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
345-436 aa · 92 aa · 11.3% of protein
Raw token
HATPase_c:345:0.00000000000017:436:108:1093 HisKA_3#3
691-761 aa · 71 aa · 8.7% of protein
Raw token
HisKA_3:691:0.000011:761:71:68- Raw architecture: HisKA_3:244:4.84e-16:302:59:68#HATPase_c:345:0.00000000000017:436:108:109#HisKA_3:691:0.000011:761:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003465455::NZ_QSAR01000003.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span211380-214739Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV59_03970RefSeq proteinWP_117772944.1
Context group ID
GCF_003465455::NZ_QSAR01000003.1::G00006Context members
DWV59_RS03970DWV59_RS03975
Partner locus tags
DWV59_RS03970DWV59_RS03975
Partner old locus tags
DWV59_03970DWV59_03975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117772944.1Primary protein accession used for annex mappings.
UniProt accessionA0A395Y0A1Primary UniProt accession resolved in the annex database.
UniProt IDA0A395Y0A1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV59_RS03970Primary locus identifier stored in the genes table.
Old locus tagDWV59_03970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAR01000003.1Sequence record reported by the local genomic context database.
Genomic interval211 380-213 827 nt2 448 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span211 380-214 739 ntGCF_003465455::NZ_QSAR01000003.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003465455::NZ_QSAR01000003.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAR01000003.1All displayed genes belong to this local TCS context.
Neighborhood span211 380-214 739 nt3 360 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
211 380 nt214 739 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV59_RS03970GCF_003465455#DWV59_RS03970
HKClassicCurrent focus
211 380-213 827 nt · Forward (+)
DWV59_RS03975GCF_003465455#DWV59_RS03975
RRNarL
213 849-214 739 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465095#DWV64_RS04450Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0534773
Simplified PFAM architecture for HKOC_0534773
PFAM domain coverage: 407 / 815 aa (49.9%)
1 aa815 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-610]
- Domain count: 4
- Matched identifier: HKOC_0534773
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-610
Cluster members and taxonomy
Representative gene: GCF_003465095#DWV64_RS04450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003465455
AssemblyASM346545v1 · Scaffoldhaploid
Genome composition2 685 340 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key