1 Response_reg#1
11-124 aa · 114 aa · 49.4% of protein
Raw token
Response_reg:11:0.00000000000000188:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV88_RS01685
Response regulator NarL family
Bifidobacterium longum · GCF_003465365
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003465365#DWV88_RS01685Stable P2CS identifier used across views.
GenomeGCF_003465365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 231 aa (74.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-225 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:168:3.06e-26:225:58:58- Raw architecture: Response_reg:11:0.00000000000000188:124:114:111#HTH_LUXR:168:3.06e-26:225:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003465365::NZ_QRZY01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span389312-390007Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV88_01680RefSeq proteinWP_007055360.1
Context group ID
GCF_003465365::NZ_QRZY01000001.1::G00003Context members
DWV88_RS01685
Partner locus tags
DWV88_RS01685
Partner old locus tags
DWV88_01680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007055360.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FN61Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FN61_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV88_RS01685Primary locus identifier stored in the genes table.
Old locus tagDWV88_01680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRZY01000001.1Sequence record reported by the local genomic context database.
Genomic interval389 312-390 007 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span389 312-390 007 ntGCF_003465365::NZ_QRZY01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003465365::NZ_QRZY01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRZY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span389 312-390 007 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
389 312 nt390 007 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV88_RS01685GCF_003465365#DWV88_RS01685
RRNarLCurrent focus
389 312-390 007 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000185665#HMPREF0177_RS07090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120003
Simplified PFAM architecture for RROC_1120003
PFAM domain coverage: 169 / 232 aa (72.8%)
1 aa232 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[170-225]
- Domain count: 2
- Matched identifier: RROC_1120003
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 170-225 ; GerE 170-225
Cluster members and taxonomy
Representative gene: GCF_000185665#HMPREF0177_RS07090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003465365
AssemblyASM346536v1 · Scaffoldhaploid
Genome composition2 319 487 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key