Gene detail

DWV61_RS01555

Histidine kinase, Classic

Bifidobacterium pseudocatenulatum · GCF_003465135

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_003465135#DWV61_RS01555Stable P2CS identifier used across views.

GenomeGCF_003465135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_1977150Run 6 · 5 sequences · id 100% · cov 80% · representative

External referencesWP_117791080.1 · MIST4 DWV61_RS01555RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_c

Protein length449 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage175 / 449 aa (39.0%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa449 aa

Domain-by-domain annotation2 items

1 HisKA_3#1

216-280 aa · 65 aa · 14.5% of protein

Raw tokenHisKA_3:216:0.00000000000000276:280:65:68

2 HATPase_c#2

326-435 aa · 110 aa · 24.5% of protein

Raw tokenHATPase_c:326:0.0000000339:435:112:109

Raw architecture: HisKA_3:216:0.00000000000000276:280:65:68#HATPase_c:326:0.0000000339:435:112:109
Domain description: 1 HisKA_3,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_003465135::NZ_QSAP01000001.1::G00002

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span399994-402002Genomic interval covered by the local TCS group.

Identifiers

Old locus tagDWV61_01555RefSeq proteinWP_117791080.1

Context group IDGCF_003465135::NZ_QSAP01000001.1::G00002

Context members

DWV61_RS01555DWV61_RS01560

Partner locus tags

DWV61_RS01555DWV61_RS01560

Partner old locus tags

DWV61_01555DWV61_01560

Partner protein IDs

WP_117791080.1 WP_033524130.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_117791080.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagDWV61_RS01555Primary locus identifier stored in the genes table.

Old locus tagDWV61_01555Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_QSAP01000001.1Sequence record reported by the local genomic context database.

Genomic interval399 994-401 343 nt1 350 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span399 994-402 002 ntGCF_003465135::NZ_QSAP01000001.1::G00002

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_003465135::NZ_QSAP01000001.1::G00002

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_QSAP01000001.1All displayed genes belong to this local TCS context.

Neighborhood span399 994-402 002 nt2 009 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

399 994 nt402 002 nt

+-DWV61_RS01555 DWV61_RS01560

Neighborhood gene cards

2 genes in the current local neighborhood.

DWV61_RS01555GCF_003465135#DWV61_RS01555

HKClassicCurrent focus

399 994-401 343 nt · Forward (+)

Old locus DWV61_01555RefSeq WP_117791080.1

Open current gene

DWV61_RS01560GCF_003465135#DWV61_RS01560

RRNarL

401 343-402 002 nt · Forward (+)

Old locus DWV61_01560RefSeq WP_033524130.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1977150HK

Run 65 sequencesid 100%cov 80%

PFAM HisKA_3

Current gene is the representative sequence.

Selected clusterHKOC_1977150Run 6 · HK · 5 sequences

Representative sequenceGCF_003465135#DWV61_RS01555The current gene is the representative for this cluster.

PFAM architectureHisKA_31 domain in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_1977150

Simplified PFAM architecture for HKOC_1977150

PFAM domain coverage: 66 / 449 aa (14.7%)

1 aa449 aa

HisKA_3

Simplified architecture: HisKA_3
Raw architecture: HisKA_3[216-281]
Domain count: 1
Matched identifier: HKOC_1977150
Positioned domains: HisKA_3 216-281

Cluster members and taxonomy

Representative gene: GCF_003465135#DWV61_RS01555

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 28 026 · GCF_003465135

AssemblyASM346513v1 · Scaffoldhaploid

Genome composition2 267 953 bp · 56,0% GCBifidobacterium pseudocatenulatum

Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

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