1 Response_reg#1
9-146 aa · 138 aa · 46.6% of protein
Raw token
Response_reg:9:9.86e-27:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV64_RS04445
Response regulator NarL family
Bifidobacterium longum · GCF_003465095
ClassRRTypeNarLLength296 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003465095#DWV64_RS04445Stable P2CS identifier used across views.
GenomeGCF_003465095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 296 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa296 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
233-290 aa · 58 aa · 19.6% of protein
Raw token
HTH_LUXR:233:5.15e-25:290:58:58- Raw architecture: Response_reg:9:9.86e-27:146:138:111#HTH_LUXR:233:5.15e-25:290:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003465095::NZ_QSAM01000004.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46256-49615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV64_04450RefSeq proteinWP_117772942.1
Context group ID
GCF_003465095::NZ_QSAM01000004.1::G00006Context members
DWV64_RS04445DWV64_RS04450
Partner locus tags
DWV64_RS04445DWV64_RS04450
Partner old locus tags
DWV64_04450DWV64_04455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117772942.1Primary protein accession used for annex mappings.
UniProt accessionA0A395XYT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A395XYT1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV64_RS04445Primary locus identifier stored in the genes table.
Old locus tagDWV64_04450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAM01000004.1Sequence record reported by the local genomic context database.
Genomic interval46 256-47 146 nt891 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 256-49 615 ntGCF_003465095::NZ_QSAM01000004.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003465095::NZ_QSAM01000004.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAM01000004.1All displayed genes belong to this local TCS context.
Neighborhood span46 256-49 615 nt3 360 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 256 nt49 615 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV64_RS04445GCF_003465095#DWV64_RS04445
RRNarLCurrent focus
46 256-47 146 nt · Reverse (-)
DWV64_RS04450GCF_003465095#DWV64_RS04450
HKClassic
47 168-49 615 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465095#DWV64_RS04445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580547
Simplified PFAM architecture for RROC_0580547
PFAM domain coverage: 125 / 296 aa (42.2%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-77] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580547
- Positioned domains: Response_reg 9-77 ; Response_reg 9-77 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_003465095#DWV64_RS04445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003465095
AssemblyASM346509v1 · Scaffoldhaploid
Genome composition2 383 621 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key