1 Response_reg#1
5-93 aa · 89 aa · 95.7% of protein
Raw token
Response_reg:5:0.00000000000000205:93:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV82_RS16605
Response regulator, CheY family
Mediterraneibacter gnavus · GCF_003464875
ClassRRTypeCheYLength93 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003464875#DWV82_RS16605Stable P2CS identifier used across views.
GenomeGCF_003464875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length93 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage89 / 93 aa (95.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa93 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.00000000000000205:93:91:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003464875::NZ_QSAA01000122.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span604-884Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV82_16610RefSeq proteinWP_243004011.1
Context group ID
GCF_003464875::NZ_QSAA01000122.1::G00011Context members
DWV82_RS16605
Partner locus tags
DWV82_RS16605
Partner old locus tags
DWV82_16610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243004011.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV82_RS16605Primary locus identifier stored in the genes table.
Old locus tagDWV82_16610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAA01000122.1Sequence record reported by the local genomic context database.
Genomic interval604-884 nt281 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span604-884 ntGCF_003464875::NZ_QSAA01000122.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464875::NZ_QSAA01000122.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAA01000122.1All displayed genes belong to this local TCS context.
Neighborhood span604-884 nt281 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
604 nt884 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV82_RS16605GCF_003464875#DWV82_RS16605
RRCheYCurrent focus
604-884 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS12805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1651742
Simplified PFAM architecture for RROC_1651742
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[141-216]
- Domain count: 2
- Matched identifier: RROC_1651742
- Positioned domains: Response_reg 4-110 ; Trans_reg_C 141-216
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS12805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003464875
AssemblyASM346487v1 · Scaffoldhaploid
Genome composition3 404 406 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key