1 HAMP#1
289-358 aa · 70 aa · 11.8% of protein
Raw token
HAMP:289:0.000000000774:358:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV82_RS14825
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003464875
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003464875#DWV82_RS14825Stable P2CS identifier used across views.
GenomeGCF_003464875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 591 aa (42.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation3 items
2 His_kinase#2
380-459 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:380:5.75e-29:459:80:803 HATPase_c#3
485-585 aa · 101 aa · 17.1% of protein
Raw token
HATPase_c:485:0.000000784:585:101:109- Raw architecture: HAMP:289:0.000000000774:358:70:69#His_kinase:380:5.75e-29:459:80:80#HATPase_c:485:0.000000784:585:101:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003464875::NZ_QSAA01000047.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8376-11778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV82_14830RefSeq proteinWP_117636835.1
Context group ID
GCF_003464875::NZ_QSAA01000047.1::G00038Context members
DWV82_RS14820DWV82_RS14825
Partner locus tags
DWV82_RS14820DWV82_RS14825
Partner old locus tags
DWV82_14825DWV82_14830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117636835.1Primary protein accession used for annex mappings.
UniProt accessionA0A396GC77Primary UniProt accession resolved in the annex database.
UniProt IDA0A396GC77_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV82_RS14825Primary locus identifier stored in the genes table.
Old locus tagDWV82_14830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAA01000047.1Sequence record reported by the local genomic context database.
Genomic interval10 003-11 778 nt1 776 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 376-11 778 ntGCF_003464875::NZ_QSAA01000047.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464875::NZ_QSAA01000047.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAA01000047.1All displayed genes belong to this local TCS context.
Neighborhood span8 376-11 778 nt3 403 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 376 nt11 778 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV82_RS14820GCF_003464875#DWV82_RS14820
RRunclassified
8 376-9 998 nt · Reverse (-)
DWV82_RS14825GCF_003464875#DWV82_RS14825
HKClassicCurrent focus
10 003-11 778 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436535#DXD36_RS15675Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1106394
Simplified PFAM architecture for HKOC_1106394
PFAM domain coverage: 80 / 591 aa (13.5%)
1 aa591 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[380-459]
- Domain count: 1
- Matched identifier: HKOC_1106394
- Positioned domains: His_kinase 380-459
Cluster members and taxonomy
Representative gene: GCF_003436535#DXD36_RS15675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003464875
AssemblyASM346487v1 · Scaffoldhaploid
Genome composition3 404 406 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key