1 HisKA#1
345-411 aa · 67 aa · 9.3% of protein
Raw token
HisKA:345:0.0000000000000146:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV82_RS13840
Histidine kinase, Hybrid
Mediterraneibacter gnavus · GCF_003464875
ClassHKTypeHybridLength721 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003464875#DWV82_RS13840Stable P2CS identifier used across views.
GenomeGCF_003464875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 721 aa (42.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
458-576 aa · 119 aa · 16.5% of protein
Raw token
HATPase_c:458:2.93e-26:576:119:1093 Response_reg#3
599-715 aa · 117 aa · 16.2% of protein
Raw token
Response_reg:599:2.81e-27:715:117:111- Raw architecture: HisKA:345:0.0000000000000146:411:67:64#HATPase_c:458:2.93e-26:576:119:109#Response_reg:599:2.81e-27:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003464875::NZ_QSAA01000037.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9642-11807Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV82_13845RefSeq proteinWP_117994989.1
Context group ID
GCF_003464875::NZ_QSAA01000037.1::G00032Context members
DWV82_RS13840
Partner locus tags
DWV82_RS13840
Partner old locus tags
DWV82_13845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117994989.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q4HVW7Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q4HVW7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV82_RS13840Primary locus identifier stored in the genes table.
Old locus tagDWV82_13845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAA01000037.1Sequence record reported by the local genomic context database.
Genomic interval9 642-11 807 nt2 166 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 642-11 807 ntGCF_003464875::NZ_QSAA01000037.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464875::NZ_QSAA01000037.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAA01000037.1All displayed genes belong to this local TCS context.
Neighborhood span9 642-11 807 nt2 166 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 642 nt11 807 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV82_RS13840GCF_003464875#DWV82_RS13840
HKHybridCurrent focus
9 642-11 807 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003464875#DWV82_RS13840The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730884
Simplified PFAM architecture for HKOC_0730884
PFAM domain coverage: 300 / 721 aa (41.6%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[460-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0730884
- Positioned domains: HisKA 345-411 ; HATPase_c 460-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_003464875#DWV82_RS13840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003464875
AssemblyASM346487v1 · Scaffoldhaploid
Genome composition3 404 406 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key