1 HAMP#1
167-236 aa · 70 aa · 14.2% of protein
Raw token
HAMP:167:1.43e-16:236:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV82_RS12970
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003464875
ClassHKTypeClassicLength494 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003464875#DWV82_RS12970Stable P2CS identifier used across views.
GenomeGCF_003464875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 494 aa (50.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-328 aa · 68 aa · 13.8% of protein
Raw token
HisKA:261:0.0000000000000337:328:68:643 HATPase_c#3
373-481 aa · 109 aa · 22.1% of protein
Raw token
HATPase_c:373:2.63e-18:481:110:109- Raw architecture: HAMP:167:1.43e-16:236:70:69#HisKA:261:0.0000000000000337:328:68:64#HATPase_c:373:2.63e-18:481:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003464875::NZ_QSAA01000031.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6226-8387Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV82_12975RefSeq proteinWP_117994760.1
Context group ID
GCF_003464875::NZ_QSAA01000031.1::G00025Context members
DWV82_RS12970DWV82_RS12975
Partner locus tags
DWV82_RS12970DWV82_RS12975
Partner old locus tags
DWV82_12975DWV82_12980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117994760.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3F9D6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3F9D6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV82_RS12970Primary locus identifier stored in the genes table.
Old locus tagDWV82_12975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAA01000031.1Sequence record reported by the local genomic context database.
Genomic interval6 226-7 710 nt1 485 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 226-8 387 ntGCF_003464875::NZ_QSAA01000031.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464875::NZ_QSAA01000031.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAA01000031.1All displayed genes belong to this local TCS context.
Neighborhood span6 226-8 387 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 226 nt8 387 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV82_RS12970GCF_003464875#DWV82_RS12970
HKClassicCurrent focus
6 226-7 710 nt · Reverse (-)
DWV82_RS12975GCF_003464875#DWV82_RS12975
RROmpR
7 710-8 387 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003464875#DWV82_RS12970The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1510800
Simplified PFAM architecture for HKOC_1510800
PFAM domain coverage: 226 / 494 aa (45.7%)
1 aa494 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[261-326] | HATPase_c[374-481]
- Domain count: 3
- Matched identifier: HKOC_1510800
- Positioned domains: HAMP 184-235 ; HisKA 261-326 ; HATPase_c 374-481
Cluster members and taxonomy
Representative gene: GCF_003464875#DWV82_RS12970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003464875
AssemblyASM346487v1 · Scaffoldhaploid
Genome composition3 404 406 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key